This is a blog detailing the creation/evolution/ID controversy and assorted palaeontological news. I will post news here with running commentary.
Thursday, January 29, 2009
Jerry Coyne on the Intersection of Science and Faith
He starts by pointing out somethin somewhat sobering that most of us know even we try not to think about it:
Throughout our country, school boards are trying to water down the teaching of evolution or sneak creationism in beside it. And the opponents of Darwinism are not limited to snake-handlers from the Bible Belt; they include some people you know. As Karl Giberson notes in Saving Darwin, "Most people in America have a neighbor who thinks the Earth is ten thousand years old."
He rejects Miller's idea that populism is to blame for the rejection of evolution in this country:
The resistance to evolution in America has little to do with populism as such. Our ornery countrymen do not rise up against the idea of black holes or the proof of Fermat's Last Theorem. It is evolution that is the unique object of their ire, and for this there is only one explanation. The facts are these: you may find religion without creationism, but you will never find creationism without religion. Miller and Giberson shy away from this simple observation. Their neglect of the real source of creationism is inexcusable but understandable: a book aiming to reconcile evolution and religion can hardly blame the faithful.
This has led me to wonder about a challenge that was raised by someone, don't remember who, to wit: find me one person, just one, who does not believe in God but is convinced that the earth was created in the last ten thousand years based solely on the evidence. I think you would be looking a long time. He begins his conclusion thus:
Giberson and Miller are thoughtful men of good will. Reading them, you get a sense of conviction and sincerity absent from the writings of many creationists, who blatantly deny the most obvious facts about nature in the cause of their faith. Both of their books are worth reading: Giberson for the history of the creation/ evolution debate, and Miller for his lucid arguments against intelligent design. Yet in the end they fail to achieve their longed-for union between faith and evolution. And they fail for the same reason that people always fail: a true harmony between science and religion requires either doing away with most people's religion and replacing it with a watered-down deism, or polluting science with unnecessary, untestable, and unreasonable spiritual claims.
I think that this sidesteps the role of the Spirit. For many of us who believe in God (and yes, it is belief, because we cannot prove it) the Spirit plays a more important role in our mental/theological lives than in our physical lives. The classic Christian construction is that our hearts and minds should be saved. It says nothing about our bodies. Those will die and decay.
Coyne also states one other thing that is perhaps true, perhaps not:
Unfortunately, some theologians with a deistic bent seem to think that they speak for all the faithful. These were the critics who denounced Dawkins and his colleagues for not grappling with every subtle theological argument for the existence of God, for not steeping themselves in the complex history of theology. Dawkins in particular was attacked for writing The God Delusion as a "middlebrow" book. But that misses the point. He did indeed produce a middlebrow book, but precisely because he was discussing religion as it is lived and practiced by real people. The reason that many liberal theologians see religion and evolution as harmonious is that they espouse a theology not only alien but unrecognizable as religion to most Americans.
Most protestant denominations and Catholics do not have a problem with evolution. It is only the very hard line evangelical community that dismisses it. As Conrad Hyers and others have taken pains to write, this proceeds from an untenable, literal reading of scripture that was simply not meant to be taken as a scientific guide to the creation of the universe.
Coyne is certainly right about how different people practice theology but he mistakenly dismisses all Christians who accept evolution as being "liberal theologians" when some of us aren't anything of the sort.
Tuesday, January 27, 2009
More Evidence of Dinosaurs With Feathers
These feathers had a central shaft with veins branching out from either side, paleontologists said. Other feathers on the head, neck and trunk were long and broad, with no branching.
They were not for flight, but might have kept the dinosaurs warm and looking good, said Xing Xu of the Institute of Vertebrate Paleontology and Paleoanthropology at the Chinese Academy of Sciences in Beijing.
This is the first of several steps that some of these theropods underwent in their transformation to birds.
A Biochemist Speaks Out:
But is there a scientific debate with regards to evolution? Yes, there is, but it bears absolutely no resemblance to the one being waged on the ideological front in school boards across the country. The actual debates within evolutionary biology can be roughly divided in two branches: sequential and mechanistic (this is my terminology, not particularly official).
The sequential debates regard phylogenetics, which can be very simply described as how living organisms relate to one another with regards to evolution. Very simply put, it is the debate about our biological family tree; who came from who, whether organism A and organism B share a common anscestor or are similar because of convergent evolution, who came first in the evolutionary tree etc.
The mechanistic debate is a much more fiercely fought one amongst evolutionary biologists, a debate that is not at all aided by its exploitation and mischaracterization by creationists. The debate involves which mechanism or mechanisms are mainly responsible for the evolution of life; whether one mechanism works or not, how well different mechanisms account for recorded events in evolution and whether one mechanism is more dominant than another. The two sides can be (again, very roughly) divided between those who believe that gradual neo-Darwinian evolution is chiefly or solely responsible for the evolution of life and those who believe that gradualist explanations are insufficient and that other mechanisms capable of introducing very fast changes in organisms must be taken into account or even considered dominant.
Both Neil Shubin and Donald Prothero devote sections of their books to this topic and both are highly worth reading. It is, however, dense stuff. The classic model explains the mechanisms of evolution as being selection, genetic drift, gene flow and mutation, which all work in concert to produce new species and alter population gene frequencies. Even reading anyone writing during the heyday of the new synthesis in the 1940s through the 1980s (George Gaylord Simpson, J.B.S. Haldane, Sewall Wright, Ernst Mayr and so on) one can see that there is a huge amount of evidence and theory underlying these basic tenets.Things have moved along nicely since then with the advent of evo-devo and it is hard to stay current if you don't eat and breathe this stuff.
Monday, January 26, 2009
Texas: How Some Parochial Schools Teach Evolution
Teachers at two of San Antonio's better-known institutions said there is less friction over how they approach the delicate religion vs. science question.
Rob Friedrich, co-chairman of the science department at TMI — The Episcopal School of Texas, said it's not that hard.
“One of the wonderful things about TMI is we don't have any problem with teaching science in science classes and religion in religion classes,” said Friedrich, who is a member of the National Center for Science Education, which defends the teaching of evolution in public schools. The theory of evolution is “the cornerstone of teaching biology,” he said. Without it, it would be “like teaching chemistry without teaching atomic theory.”
But that doesn't mean there's no room for talking about intelligent design and creationism, which, Friedrich argues, are not scientific theories. If students have a genuine religious objection to evolution, Friedrich said he takes the time to talk it out. “I have no problem with that,” he said. “But I impress on them that it is a religious conflict, not a scientific conflict.”
Yes, it is. Refreshing news. Read the whole thing.
Open Letter to Barbara Cargill
“There are many, many gaps that don’t link species changing and evolving into another species, so we want our students to get all of the science, and we want them to have great, open discussions and learning to respect each other’s opinions,” said Barbara Cargill, R-The Woodlands, a former science teacher.
I have written Ms. Cargill the following letter:
Dear Ms. Cargill,
You were quoted in today's Houston Chronicle thus:
“There are many, many gaps that don’t link species changing and evolving into another species, so we want our students to get all of the science, and we want them to have great, open discussions and learning to respect each other’s opinions,” said Barbara Cargill, R-The Woodlands, a former science teacher.
As a scientist keenly interested in how this debate is resolved I am curious: what is your evidence for the above quotation? Are you familar with Donald Prothero's book "Evolution: What the Fossils Say and Why It Matters?" If not, please avail yourself of an opportunity to pick up a copy and read it. It is extraordinarily informative and addresses exactly the issue you raise. Thank you so much for your time.
Sincerely,
James Kidder, Ph.D.
I am curious to see if I get a response.
The Texas Science Standards: Not Taking No For an Answer
The new proposals came just one day after the board — in a move celebrated by many scientists — narrowly agreed to delete a provision in current curriculum standards that requires teachers to instruct students in weaknesses and strengths of evolution theory.
The “strengths and weaknesses” standard has been a staple in the curriculum for about 20 years.
On Friday, however, the board looked again at the issue and decided students should have to evaluate a variety of fossil types and assess the arguments against universal common descent, which serves as a main principle of evolution — that all organisms have a common ancestor.
The board’s effort to undermine “universal common descent” in public schools will make the state’s science standards “an object of ridicule,” said Steve Schafersman, president of Texas Citizens for Science.
“It’s really unscientific. It promotes creationism. It says that students will be required to learn arguments against common descent or ancestral connections,” Schafersman said. “The only alternative to common descent is creationism in their minds.”
This has raised the hackles of some:
They are asking students to explain something that does not exist, said David Hillis, a biology professor at the University of Texas at Austin and MacArthur Foundation “genius award” winner.
“This new proposed language is absurd. It shows very clearly why the board should not be rewriting the science standards, especially when they introduce new language that has not even been reviewed by a single science expert,” Hillis said.
They've got persistence, I'll give them that.
Sunday, January 25, 2009
Answers in Genesis and the "Mess in Texas"
The board of education in Texas took testimony this week on revising the state’s science standards. According to the recent standards, students have been required to critique all scientific explanations and explore their “strengths and weaknesses.” On Thursday, the board voted on the advice of evolutionary scientists to reject an amendment that would have retained the phrase “strengths and weaknesses.” Those who wanted the phrase stripped say that the wording allows the teaching of creation or intelligent design in science classes. Interestingly, however, it should be pointed out that the phrase “strengths and weaknesses” is used several times in the science curriculum and applies to every science field, not just biological origins. But the evolutionists are stressing the phrasing of the biology curriculum to the news media, and that’s how the dispute is being largely represented to the public.
This is a bit of a smokescreen. The idea that the strengths and weaknesses language was designed for all sciences is belied by the fact that all of the promoters of the language were creationists who are opposed to evolution. See this post for more information. Even the above statement singles out "evolutionary scientists." It is being presented to the public largely because that is how it played out. A cursory trip to AIG yields this banner at the top of the page.

If they aren't about evolution, what are they about? That is why this SBOE ruling is so important to these guys.
Saturday, January 24, 2009
The New Scientist and the "Tree of Life"

I have to agree with his assessment. Here is the article in question, which is, if somewhat sensationalized, fairly tame. It focuses on the concept of Horizontal Gene Transfer and the idea that Darwin's original "Tree of Life" idea does not fit modern evolutionary thought:
As more and more genes were sequenced, it became clear that the patterns of relatedness could only be explained if bacteria and archaea were routinely swapping genetic material with other species - often across huge taxonomic distances - in a process called horizontal gene transfer (HGT).
A bit later:
As it became clear that HGT was a major factor, biologists started to realise the implications for the tree concept. As early as 1993, some were proposing that for bacteria and archaea the tree of life was more like a web. In 1999, Doolittle made the provocative claim that "the history of life cannot properly be represented as a tree" (Science, vol 284, p 2124). "The tree of life is not something that exists in nature, it's a way that humans classify nature," he says.
Thus began the final battle over the tree. Many researchers stuck resolutely to their guns, creating ever more sophisticated computer programs to cut through the noise and recover the One True Tree. Others argued just as forcefully that the quest was quixotic and should be abandoned.
Of course, this discussion in no way impugns evolutionary theory. It is roughly analogous to the revelation that evolution does not always proceed slowly beneficial gene by beneficial gene, but sometimes through developmental leaps by way of hox genes. Hence the study of evo-devo.
It has become clear that evolution proceeds much more in the form of a bush rather than a tree and that is how most palaeontologists view things. The problem is that this is the cover of the newsstand copy and people that look at it will think that Darwin was wrong, therefore evolution was wrong. This is a colossal blunder. A statement should be released immediately explaining what the cover means, not that anybody will read it. The creationists will have a field day.
Friday, January 23, 2009
Steven Schafersman Liveblogging the Texas SBOE Meeting
Mercer [board member?] says he and his colleagues have received 6,500 emails in the last two days from citizens that want S&W retained. He considers the S&W a matter of academic freedom and freedom of speech. He again used the bogus and misleading examples of Piltdown Man, Haeckel's vertebrate embryo drawings, the peppered moths that were glued to tree trunks, and the half-bird, half-dinosaur that were all "evolutionary frauds." Mercer's complete and total ignorance of science is just spellbinding. Three of these were not frauds. We now have excellent legitimate fossils of feathered dinosaurs that are on the lineage to become birds; the peppered moths are in no way a fraud but are still today accepted as good scientific research; the most recent interpretation of Haeckel indicates that he was not engaging in a fraud but used the best data he had. The Piltdown Man "fraud" was just a joke gone bad; it was not widely accepted by scientists and its hoax was revealed by scientists.
In actuality, Piltdown probably was a fraud, perpetrated by Charles Dawson, who had perpetrated a series of frauds on the art and scientific community for some thirty years. That doesn't change the lack of scientific knowledge on the part of the board member. What scares me is that he is probably representative of how much the average person knows about science.
Board Votes Against "Weaknesses" Language
In a major defeat for social conservatives, a sharply divided State Board of Education voted Thursday to abandon a longtime state requirement that high school science teachers cover what some critics consider to be "weaknesses" in the theory of evolution.
Under the science curriculum standards recommended by a panel of science educators and tentatively adopted by the board, biology teachers and biology textbooks would no longer have to cover the "strengths and weaknesses" of Charles Darwin's theory that man evolved from lower forms of life.
Somewhat awkwardly put, but that is gist of it. There was one wrinkle, however:Evolution critics did score a minor victory, as the board agreed to an amendment that calls for students to discuss the "sufficiency or insufficiency" of Darwin's tenet that living things have a common ancestry.
That change was proposed by board chairman Don McLeroy, R-College Station, who also supported the defeated strengths-and-weaknesses requirement.
As I have noted before, it is difficult to understand how someone like McLeroy can become the head of the board, since he evidently knows so little about evolution and biology in general.
More on the Board Vote Today
Science and religion collide today when the State Board of Education takes a preliminary vote on curriculum standards that could affect the teaching of evolution in Texas public schools for the next decade.
The argument hinges on a single word: weaknesses.
A panel of science experts has recommended that teachers no longer be required to present the “strengths and weaknesses” of various theories, including evolution.
Instead, the proposed science curriculum standards would encourage students to use critical thinking, scientific reasoning and problem solving to analyze and evaluate scientific explanations.
As I have noted before, the "weaknesses" ruse is only aimed at evolution. Let's see how the vote turns out!
Human Habitation in England Pushed Back to 600k
The re-examination of animal bones and artefacts unearthed in the 1980s has shown evidence of a human settlement much earlier than previously thought.
The revised date is being hailed as one of the most exciting developments in British archaeology and paleontology since prehistoric human remains were unearthed at Boxgrove, West Sussex, in 1993.
The bones found at Westbury-sub-Mendip came from rhinoceroses, hyenas, wolves, bison and cave bears, and showed straight cut marks that could have been made only by butchery with a sharp cutting implement, along with shaped flints that have now been identified as hand axes.
Neat.
Thursday, January 22, 2009
Misrepresentation at the Texas SBOE
Arber concluded that the genetic mechanisms that produce variation are designed and are not products of Darwinian evolution. Furthermore, this variation--often called microevolution--has clear limits and is unable to produce macroevolution. Arber stressed that the knowledge of the "molecular basis of biological evolution" impacts not only "our worldview" in the areas of origins, but also has implications for the possible risks of genetic engineering. It is for this reason that Arber affirmed that only the existence of a Creator God is a satisfactory solution to the problem of biological origins.
Arber responded thus:
TO WHOM IT MAY CONCERN:
I recently got aware of an article entitled "Werner Arber: Nobel Laureate, Darwin Skeptic" that was published in September 2008 by the Institute for Creation Research and that is authored by Jerry Bergman, Ph.D. This article completely misinterprets my general conclusions that I base on several decades of studies in microbial genetics. A number of citations are taken out of their original context and surrounded by comments and misinterpretations by the author of the article. The truth is that I have contributed to advance scientific knowledge on biological evolution by studying molecular mechanisms of genetic variation. Genetic variation is clearly the driving force of biological evolution. A number of different specific molecular mechanisms contribute to spontaneous genetic variation. Together with non-genetic elements specific gene products are thereby involved as variation generators and as modulators of the rates of genetic variation. These are established facts that are based on experimental evidences and that are valid for the course of biological evolution as it works today in living organisms. Theoretically, one can extrapolate into the past history of life development on Earth. One can, e.g., postulate how the genes involved in biological evolution may have become fine-tuned to insure to living organisms a comfortable genetic stability and at the same time to the populations of living organisms an evolutionary development, including adaptability to changing living conditions and an expansion of biodiversity. In contrast, there is, so far, neither satisfactory scientific knowledge nor theory on the origin and early evolution of life on our planet.
On solid scientific grounds one cannot expect to discover if a Creator as defined by religious beliefs and sometimes referred to as intelligent design or God's Will, could be responsible for the origin and subsequent evolution of life. Serious scientific investigations can neither prove nor disprove the existence of God or a possible impact of God on evolutionary processes. In our civilization, both scientific knowledge and religious beliefs contribute essentially to our orientating knowledge, but these two sources of our worldview should not be intermingled.
In conclusion, I am neither a "Darwin skeptic" nor an "intelligent design supporter" as it is claimed in Bergman's article. I stand fully behind the NeoDarwinian theory of biological evolution and I contributed to confirm and expand this theory at the molecular level so that it can now be called Molecular Darwinism.
Werner Arber
Professor emeritus for Molecular Microbiology,
University of Basel.
Nobel Laureate Medicine/Physiology 1978
Meanwhile, in Mississippi...
The State Board of Education shall require every textbook that includes the teaching of evolution in its contents to include the following language on the inside front cover of the textbook:
"The word 'theory' has many meanings, including: systematically organized knowledge; abstract reasoning; a speculative idea or plan; or a systematic statement of principles. Scientific theories are based on both observations of the natural world and assumptions about the natural world. They are always subject to change in view of new and confirmed observations.
There are so many things wrong with this disclaimer, one doesn't know where to start. The word "theory" has only one meaning to any working scientist: a broad statement of relationships describing a particular set of phenomena that are well supported by scientific hypotheses. That's it. When someone like Ronald Reagan says "Well, its only a theory," he really means he doesn't know what a theory is. This is true over and over again in dealings with creationists—they have no idea what the word "theory" means. It sure as Hell doesn't mean "speculative idea or plan."
This textbook discusses evolution, a controversial theory some scientists present as a scientific explanation for the origin of living things. No one was present when life first appeared on earth. Therefore, any statement about life's origins should be considered a theory.
Evolution is only controversial to creationists. To 99% of practicing biological scientists, it is established science. Consequently, the statement "some scientists present" is a complete fabrication. Only someone completely ignorant of the biological sciences would write this.Evolution refers to the unproven belief that random, undirected forces produced living things. There are many topics with unanswered questions about the origin of life which are not mentioned in your textbook, including: the sudden appearance of the major groups of animals in the fossil record (known as the Cambrian Explosion); the lack of new major groups of other living things appearing in the fossil record; the lack of transitional forms of major groups of plants and animals in the fossil record; and the complete and complex set of instructions for building a living body possessed by all living things.
This is out of the creationists playbook. The Cambrian "explosion" is only an explosion if you think that 50 million years is a rapid period of time. Also, many new groups of animals appeared after this period—dinosaurs, anyone? To creationists, there are no transitional forms because they define transitional form in such a way that none would ever be found.Study hard and keep an open mind."
As long as you are not thinking about evolution! Hat tip to LGF and Ed Brayton.
Deception, Texas-Style
The minority report was sent in secret to the SBOE without the knowledge of the other ESS panel members. Secret minority reports are especially reprehensible, since the scientist panel members, the "majority," did not have a chance to respond to or forestall the minority report by more discussion and possible compromise. Also, minority reports are supposed to be written after all the work of the panel is completed and the two sides are at an impasse, which was not the case here. This minority report was written on November 6, soon after the Oct 30-Nov 1 penultimate meeting of the ESS panel. The last meeting was scheduled for Dec 4-6, so there was plenty of time to deal with issues contained in the minority report and make changes that might be agreeable to all. [Roger] Sigler and [Tom] Henderson sent the minority report was sent [sic] to all the SBOE members--the ultimate decision-makers--without any context or forewarning to their colleagues on the ESS panel. The majority on the ESS panel never had an opportunity to respond to or even read the minority report, and have never had the opportunity to write a rebuttal to the SBOE. For almost two months, the minority report was the only ESS report that the SBOE had--the de facto ESS report--which is extremely destructive and unfortunate.
Henderson and Sigler agreed to withdraw the minority report if their concerns were addressed, and, according to Schafersman, they were. Subsequently, however, a second minority report appeared. According to Schafersman:
Needless to say, this is appalling. They had promised to withdraw the minority report if we carefully addressed their concerns, which we did, and then they broke their word. We did accept some of their suggestions that were not scientifically debilitating, and modified a few sentences that had the effect of making some statements less certain or exact, and all these changes are documented in the comments. We never promised to make all the changes they wanted, and we couldn't have done this, since many of the changes were unscientific and would have had the effect of confusing students rather than educating them about science. The behavior of Sigler and Henderson makes me certain that the purpose of the minority report is what I suspected from the first: a device to sabotage the scientific quality and integrity of the ESS standards by giving some unscrupulous SB members a hook to attack them.
...The worst part of this experience is that Henderson and Sigler duplicitously misled the ESS workgroup's members into believing that their cooperation would remove the minority report. I believe they intended to sabotage our group's efforts from the beginning with a minority report, and never planned to withdraw it after we made the changes in their favor. Also, I don't believe that Sigler and Henderson acted alone, but in my opinion conspired with Terri Leo and David Bradley to create a provocative report that could be used by the two SBOE members to convince the others to vote to censor the ESS standards in favor of removing offending requirements (fossil evolution, ancient age of Earth, origin of life) and inserting other language that would weaken the document (uncertainties with radiometric dating, global warming, and of course "strengths and weaknesses").
As we saw from the Dover School Board trial, it apparently is not above YEC supporters to deceive and lie to get what they want. That is sad.
Monday, January 19, 2009
It Snowed Today...
This town used to do snow quite well. Even as late as the mid-90s, there were some nice snows. Last year was the first one that I can remember in which there was no snow at all. Onward toward the Jurassic!!
Evolution: Multiple Beneficial Mutations in One Generation
Working with populations of yeast cells, which were color-coded by fluorescent markers, Katy Kao, assistant professor in the Artie McFerrin Department of Chemical Engineering, and Stanford University colleague Gavin Sherlock were able to evolve the cells while maintaining a visual analysis of the entire process.
Their research, which appears in the December edition of Nature Genetics, shows the evolutionary process to be much more dynamic than initially thought, with multiple beneficial adaptations arising within a population. These adaptations, Kao explained, triggered a competition between these segments, known as “clonal interference.”
Beneficial mutations have always been thought to arise sequentially, with selection acting on each one in turn. Further, it was found that some beneficial mutations do not survive in successive generations. In hindsight, this seems reasonable since in any given generation of an organism, a wide variety of variation is present, each to be acted on independently. It is just neat to see it in action.
Hat tip to LGF.
Saturday, January 17, 2009
Texas Redux
The SBOE is holding a public hearing January 21 on science standards, and the people at the Discovery Institute, who think Intelligent Design blows away that whole stoopid "evolution" theory, are happy as unevolved clams.
"We're very pleased that in this Darwin bicentennial year Texas has invited scientists on both sides of the evolution debate to testify about the scientific status of Darwin's theory," said Dr. John West, associate director of Discovery Institute's Center for Science & Culture, in a statement released today.
It is telling that the DI is so out of touch with what evolutionary theory is that they continue to call it "Darwin's theory" as if there have been no advancements since his time. Time to drag in the Dover ruling.
Hat tip to Little Green Footballs.
Friday, January 16, 2009
Louisiana: A Few More Unanswered Questions
Before Thursday's vote, Marjorie Esman, the executive director of the ACLU of Louisiana, said the guidelines don't include enough detail about the procedure for challenging supplemental materials introduced into science classes.
Esman said questions also remained about whether challenged materials could be used by teachers until the objection was heard by education leaders.
"Nobody under these provisions will know what to do, not the parent, not the teacher, not the school," she said.
State Superintendent of Education Paul Pastorek said the education department has detailed plans for how to handle objections."We spent a great deal of time with our lawyers," he said.
Pastorek offered the department's lawyers to meet with Esman. He said if she has further problems, she can present those to BESE at a later meeting, and Esman agreed.
Opponents of the law have predicted it likely will result in a lawsuit.
Yup.