Saturday, September 22, 2018

Did the LCA Have Teeth More Like a Gorilla?

Artificial intelligence is playing a role in understanding human evolution.  From the Australian site News.com comes a story about new work in trying to understand what the last common ancestor to apes and humans might have looked like:
IT’S an image imprinted on our brains: the steady march of evolution from chimp to human. But it’s not quite right.

Monkeys don’t belong on the tree. They have tails.

Chimps, which don’t, are with Bonobos our closest living relatives. And, as such, both should be standing alongside us in the march of life.

Stretching out behind should be a gradually converging branch of earlier variations.

Ultimately, between six and eight million years ago, the branches almost certainly converge on one common ancestor.

We know almost nothing about what that was.
We have reasonably secure evidence of bipedality at around 6 million years in the form of Orrorin tugenensis from Kenya, as well as a crushed skull from Chad called Sahelanthropus that may or may not be 7 million years old, and recently, fossil footprints, purporting to show bipedal walking, from Crete have been uncovered that have been dated to around 5.7 million years ago.  Beyond that, nothing.  That is where the new AI study comes in.
The researchers used machine learning to teach an artificial intelligence to identify and classify fossilised hominid teeth dating from 25 million years ago. It then sifted through these to find patterns of development.

The study published in the science journal PaleoBios found one tantalising tip.

Our common ancestor almost certainly had gorilla-like teeth.

Now, it’s not a lot. And it certainly doesn’t say our ancestor was a gorilla.

But what it does do is add some shape and substance to this nebulous period of our human origins.
The information that is contained in the article is not nearly as cut and dried as is indicated by the news story. From the conclusion:
Given that the divergence of humans and chimpanzees occurred in the late Miocene, and that Miocene apes are much more similar to Gorilla in dental proportions, we assert that
gorillas are the more appropriate extant model for the African ape LCA in terms of the relative sizes of the postcanine teeth. This similarity in dental proportions likely has implications for the interpretation of dietary adaptation and possibly phylogenetic relationships in Miocene apes, including the chimpanzee-human last common ancestor.
What this likely means is that, during the Miocene, which was the golden age of the apes, even after the divergence of Gorillas from the main line, there were extant forms that continued to have varying degrees of traits that could be associated with gorillas, presenting a classic case of collateral ancestry.  It is possible that one of the lines eventually led to chimpanzees, while another led to us.  We won't know more until we actually have some fossil remains from that missing time period. 
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Friday, September 21, 2018

World's Oldest Animal Identified

A story in CNN (linked from elsewhere) reports that the world's oldest fossil has now been dated.  Rob Picheta writes:
The oldest known animal in the geological record has been identified, in a discovery that scientists are calling "the Holy Grail of palaeontology."
Fat molecules discovered on the fossil of a mysterious creature called Dickinsonia have confirmed that that it lived 558 million years ago, making it the earliest known member of the animal kingdom.
The findings place its existence 20 million years before the Cambrian Explosion event, when major animals began appearing on the fossil record.
The fossil was first discovered by Australian scientists on a remote Russian cliff face by the White Sea in 1947 and the study, published Friday, brings to an end a decades-long debate to identify what it was.
Here is an uncredited photo of the animal:

How do we know it had "fat" molecules? Apparently, it was so well preserved that it had traces of cholesterol.
"Scientists have been fighting for more than 75 years over what Dickinsonia and other bizarre fossils of the Ediacaran Biota were: giant single-celled amoeba, lichen, failed experiments of evolution or the earliest animals on Earth," Brocks said.
"The fossil fat now confirms Dickinsonia as the oldest known animal fossil."
Another piece of the puzzle.



Wednesday, September 19, 2018

God, Marriage and Kent Hovind

If you have been following the trials and tribulations of Kent Hovind, you will know that he was once known as "Dr. Dino" and has been a staunch young earth creationist for some time.  He also kind of represents the wild wild west of creationism.  For starters, he has been roundly criticised for his academic credentials, which are somewhat more than suspect.  Prominently known for his Hovind Challenge,  he also came to the attention of the IRS, who charged him first with tax evasion and then for structuring, once he was already in jail.

Peter J. Reilly has been following the career of Kent Hovind for some time as it pertains to his tax evasion. Hovind wound up spending eight years in prison for tax evasion and almost had his sentence increased for the subsequent structuring.

Reilly's most recent column is, however, a cautionary tale involving Hovind's second ex-wife, Mary Tocco.  Through a lengthy interview, she shares her initial thoughts and then consequent misgivings about how Hovind was running his business.  The account is well worth reading, if nothing else to see how a good person can become derailed by a charlatan.  Reilly writes:
Ms. Tocco having a lot more at stake than I did looked pretty intensely into the structure that was designed to keep the man who didn't think he did anything wrong the first couple of times from getting in trouble again. And more importantly not having his second wife sucked into the vortex as his first wife was.
You don't need a palantir to see how the story ends but it reveals much about the conspiracy-theory-minded Hovind and how far off the rails he has gone.

Tuesday, September 18, 2018

Suzanne Sadedin: Is There A Place For Evolution In Intelligent Design?

Suzanne Sadedin, writing for Forbes, wonders if there is room for evolution in the Intelligent Design Movement.  This article came out almost a month ago but I have been so swamped (as well as recovering from hernia surgery) that I missed it.  She writes:
Intelligent design and evolution don’t have to be opposed. Most versions of intelligent design (other than some kinds of Young Earth Creationism) these days acknowledge some evolution, at least within species. So clearly intelligent design can include evolution. Many people are content to believe in some sort of intelligent, powerful but largely hands-off creator, who might have given evolution a nudge here and there. There’s no way anyone can prove them wrong (though I think there are good reasons not to share their beliefs).

However, when people say they believe in intelligent design, what they are usually claiming is that biology requires an intelligent designer. This goes beyond the claim that current evolutionary theory is inadequate to explain everything in biology (which any biologist could agree with). It is the claim that there can never be an adequate theory of biology without an intelligent designer.

This claim irritates biologists. But not because we are all hyper-aggressive New Atheists (we’re not). It’s irritating because the fundamental purpose of science is prediction. If adding an extra element to a scientific theory doesn’t improve its predictive power, we leave that element out. Thus, until intelligent design advocates can demonstrate that adding an intelligent designer to the theory of evolution improves our predictions, biologists will go on leaving the intelligent designer out.
This last point is very, very important. Most scientists that I know don't factor in religious belief or the existence of a creator into their hypothetical models because there is no way to test for them. I know quite a few who practice science on a daily basis (chemical engineerings, physicists, biologists, to name a few) who are Bible-believing Christians but who largely practice science in a methodologically naturalistic way. Underlying this practice is a general sense that the created universe has an order and rules that it follows.

My daughter, the other day, told me that before Isaac Newton discovered gravity, people could fly. It was, of course, a joke but it reminded me that gravity, as a force, effectively holds the universe together and if it were to suddenly not work the way we think it does, it would be catastrophic for all life. Cars are designed (well or badly) so that they will hold the road against the pull of gravity. When the testing of them occurs, it doesn't occur to the designers that the pull of gravity will change because it never has. Nowhere in their calculations is the thought that God might “lift the car off the ground and fly it through the air.” Why? Because that has never been observed.
 This overall perspective hearkens back to Darwin's original position: whether or not a creator exists, in everyday scientific explanations of how things work, invoking a creator is not necessary.  Things can be explained without reference to William Paley.  It doesn't mean there isn't a God.  I happen to believe that there is.  What it does mean is that it is of no value to factor my belief into my hypotheses about how things work in the world.  If God oversees the whole process, then everything that happens is in keeping with His plan, anyway, evolution included.  

Monday, September 17, 2018

Trouble in Arizona

Okay, time to get back in the saddle.  The Arizona Republic is running a story out of Arizona that is very disconcerting:
Here is a bit of instruction from a guy Superintendent Diane Douglas tapped to help review Arizona’s standards on how to teach evolution in science class: The earth is just 6,000 years old and dinosaurs were present on Noah’s Ark. But only the young ones. The adult ones were too big to fit, don’t you know.
"Plenty of space on the Ark for dinosaurs – no problem," Joseph Kezele explained to Phoenix New Times' Joseph Flaherty.
Flaherty reports that in August, Arizona's soon-to-be ex-superintendent appointed Kezele to a working group charged with reviewing and editing the state’s proposed new state science standards on evolution.
From the Phoenix New Times story:
Kezele teaches biology at Arizona Christian University in Phoenix. He advocates teaching his version of "established, real science" in classrooms.

Evolution, he said, is a false explanation for life and should be taught so that students "can defend against it, if they want to."

"I'm not saying to put the Bible into the classroom, although the real science will confirm the Bible," Kezele told Phoenix New Times in an interview on Wednesday. "Students can draw their own conclusions when they see what the real science actually shows."

He argued that scientific evidence supports his creationist ideas, including the claims that the Earth is only 6,000 years old and that dinosaurs were on board Noah's Ark.

ADE spokesperson Stefan Swiat said that Kezele was selected because of his position at Arizona Christian University. Swiat was unaware if Douglas knew that Kezele was a creationist when she selected him.
It is good bet that Diane Douglas knew exactly what Kezele thinks about evolution. If not, then she is extremely derelict in her job, managing to overlook a critical area of science education. She has expressed a desire that both creationism and evolution should be taught.   Depending on how this is handled, however, there are two sides to this.  One is that evolution will be taught but that the teaching of it will be severely hampered by the Arizona school board.  The other possibility is that it will provide science teachers with an opportunity to show evolution's strengths and creationism's weaknesses.  Not sure how this one is going to turn out.

Wednesday, August 29, 2018

Neandertal/Denisovan Hybrid?

As J. Lawrence Angel once said: “When two groups of people meet, they may fight, but they will always mate.”  A story is now coming out of Russia describing more research at the Denisova Cave, in the Altai Mountain region that recounts exactly what Angel was talking about.  From Richard Coniff, at Scientific American:
In a remarkable twist in the story line of early human evolution, scientists have announced the discovery of “Denisova 11”—a female who was at least 13 years old, lived more than 50,000 years ago and was a child of mixed parentage. Her parents were not just of different races, but two different and now-extinct early human types. Their exact taxonomic designations—whether they were separate species or subspecies—is still a matter of scientific debate. But the bottom line for Denisova 11 is that mom was a Neandertal and dad a Denisovan.
This is a remarkable claim, similar to the one that Erik Trinkaus made about the Lagar Velho child discovered in Portugal that is thought to be a Neandertal/modern human offspring. What evidence has been marshalled to support this claim?  In a word: genetics.  The evidence is taken from another bone fragment from the site.  From the abstract:
The father, whose genome bears traces of Neanderthal ancestry, came from a population related to a later Denisovan found in the cave. The mother came from a population more closely related to Neanderthals who lived later in Europe than to an earlier Neanderthal found in Denisova Cave, suggesting that migrations of Neanderthals between eastern and western Eurasia occurred sometime after 120,000 years ago. The finding of a first-generation Neanderthal–Denisovan offspring among the small number of archaic specimens sequenced to date suggests that mixing between Late Pleistocene hominin groups was common when they met.
So, if they interbred regularly (or regularly enough, anyway), why aren't they just one species?  Svante Paabo argues that it is because they simply did not come together very often.  To this, I would argue that they probably also had fairly distinct cultures. 

If this kind of information had come out a few decades back, there would have been quite a few squawks and naysayers but as the evidence piles up for hybridization between many different groups throughout the Pleistocene, researchers have become more accepting of it.  It is pretty clear that the evolutionary picture was a whole lot more complex than we thought. 

Tuesday, August 28, 2018

More Evidence of Complex Tool Creation By Archaic Homo sapiens

New excavations at Boxgrove, a site which dates from approximately 300 thousand years ago has yielded tools that show more complex creation strategies.  From the Independent:
The specific stone tools which were analysed as part of the study were sophisticated flint hand axes, which had required a special technique to shape them.

The technique is known to prehistorians as ‘platform preparation’. In most very early stone tools, the manufacturing process is a simple single-stage affair in which the toolmaker merely hits a lump of flint with a stone repeatedly to systematically knock bits off it until the lump has been reduced to a desired shape.

However, more sophisticated toolmakers employed a two-stage approach. First they would successively "soften up" small portions of the flint’s surface, so as to then be able to more accurately remove flakes from it, thus creating a much more sophisticated and effective tool with a better and more refined cutting edge.
Quite a bit of evidence is emerging that the group of hominins loosely called “archaic Homo sapiens” was considerably more technologically and socially advanced than we once thought. Whether or not they looked modern, they were beginning to act that way. 

Monday, August 13, 2018

Homo erectus Was Lazy??

A short piece in PhysOrg links to an article in PLoS that argues that, when faced with the opportunity to make Acheulean tools out of really good raw materials at a site in what is now Saudi Arabia, the local Homo erectus group took the easy way out and made them out of whatever was lying around.  From the PhysOrg piece: “New archaeological research from The Australian National University (ANU) has found that Homo erectus, an extinct species of primitive humans, went extinct in part because they were 'lazy'.”

First off, the first paragraph is nothing short of idiotic. There is absolutely no evidence whatsoever that Homo erectus went extinct because they were lazy. They colonized huge sections of Asia and were integral to the appearance of early modern humans in the area.They might have disappeared from this particular area of Saudi Arabia but that is all.  Also from PhysOrg:
"At the site we looked at there was a big rocky outcrop of quality stone just a short distance away up a small hill.

"But rather than walk up the hill they would just use whatever bits had rolled down and were lying at the bottom.

"When we looked at the rocky outcrop there were no signs of any activity, no artefacts and no quarrying of the stone.

"They knew it was there, but because they had enough adequate resources they seem to have thought, 'why bother?'".

This is in contrast to the stone tool makers of later periods, including early Homo sapiens and Neanderthals, who were climbing mountains to find good quality stone and transporting it over long distances.
Maybe this particular population was stressed in some way. Maybe the tools that they made were good enough to get done what they needed. Who knows. It is a huge inference, though, that because they didn't use the raw materials that were better that they were “lazy.”  The last sentence of the abstract reads thus:
The Acheulean hominins at Dawadmi were strong and skilful, with their adaptation evidently successful for some time. However, these biface-makers were also technologically conservative, and used least-effort strategies of resource procurement and tool transport. Ultimately, central Arabia was depopulated, likely in the face of environmental deterioration in the form of increasing aridity.
This sentence alone belies the opening, “lazy” paragraph of the PhysOrg story.  More junk journalism. 

Monday, August 06, 2018

Dear Arizona Residents: Vote For Jonathan Gelbart

AZ Central is reporting that of the five GOP candidates running for superintendent of schools, four of them support the teaching of creationism and intelligent design in public schools.  Ricardo Cano writes:
Jonathan Gelbart was the sole Republican candidate who opposed teaching students creationism and intelligent design. He is joined by Democrats Kathy Hoffman and David Schapira.

The four others — Bob Branch, Frank Riggs, Tracy Livingston and incumbent Diane Douglas — each said they believed students should be taught those topics in some capacity.

The state will likely decide on new science standards later this year.
Republican candidates were asked by moderator and Republic reporter Richard Ruelas whether they were in favor of teaching accepted science, including climate change and evolution.

The question morphed into a broader discussion over the teachings of creationism and intelligent design in Arizona public schools.

Gelbart, 29, a former director of charter development for BASIS.ed, touted that he is the only Republican candidate to say that he "absolutely (does) not support" including the teachings of creationism and intelligent design as part of the science standards they are required to learn.

"It's not science," Gelbart said.

Branch, 60, a professor and Maricopa County Parks and Recreation commissioner, is running on a pro-President Trump platform, emphasizing Christian conservative values.

His stance contrasted Gelbart's.

“I believe in intelligent design — I don’t believe it’s mutually exclusive from evolution," Branch said. "I believe that there is a science behind intelligent design, so where Mr. Gelbart said science should be left to science, I believe in the science of intelligent design.”
And therein lies the problem. You don't “believe” in any part of science. I doubt seriously that most of these GOP candidates, if asked what the basic tenets of biological evolution are, would be able to respond coherently.Other candidates speak of teaching "both sides" and "strengths and weaknesses" as though there are two sides.  In 150 years, no one has been able to promote a competing theory to biological evolution. All attempts to do so have failed and detractors are reduced to trying to find holes in the theory.  As I have written before, all candidates for school boards should have to pass a test in basic science literacy.  Rarely do I think that a federal solution is the answer but sometimes I wonder about this.   

Monday, July 30, 2018

Crossway: Bible Reading Habits and Ken Ham's Reaction

Crossway conducted a survey to find out which parts of the Bible Christians read and how often.  The results are not surprising.  Most people, it turns out, read the New Testament and the epistles and Revelation.  Now, having said that, the survey is oddly constructed, with a dichotomy between "hardest to understand" and "read most often."  I know people who don't understand a bit of Revelation, and yet read it in order to try to understand it.  From the story:
Many Bible readers struggle to understand certain books of the Bible (especially the prophets) and turn their attention to easier-to-grasp sections (like the Gospels and the epistles). Though tackling some of the more difficult parts of Scripture can be challenging, we should attempt to spend time in each section, trusting that each part is divinely inspired and plays an important role in the biblical narrative.
Of course, as soon as I read the part about the Gospels being easy to understand, the first passage that came to mind was John 6:57-6:63, which completely vexed the disciples.  Nonetheless, It makes sense that most people gravitate toward the epistles as the expense of, say Deuteronomy and Leviticus, simply because they reflect the teachings of Christ through Paul and comprise the nuts and bolts of Christianity. Contrast this with the narrative of the early Hebrews, who God blessed, in spite of themselves.

Consequently, it is a bit baffling (and telling) that Ken Ham responded to the survey thus:
Crossway survey re Bible reading habits. One result shows people spend much more time reading towards the end of the Bible than at the beginning. illustrates a major problem in the church--many no longer understand the foundations in Genesis
How is it a major problem in the church for people to focus on the Gospels and the epistles?  As Christ points out, He was “The Way, the Truth and the Life.”  He is the focal point of Scripture.  What is the most commonly-cited scripture?  “For God so loved the world that he gave his one and only Son, that whoever believes in him shall not perish but have eternal life.”  All of the Old Testament points toward the New Testament and Christ.  Yes, the Old Testament is important for instruction (often what not to do) and we have it for many reasons, since it is the record of God's relationship to his people.  But Christ is the pinnacle.  For those of us who profess a faith in Christianity, He is why we believe.

Is the Primeval History important?  Of course.  It shows us that God created the heavens and the earth and He, alone, is God.  That is its purpose.   But, despite what Ken Ham says, it is also controversial.  Scholars over the centuries have been perplexed about how to interpret these passages.  It is hard to reconcile the simple words of Genesis with the fact that everywhere you turn, you are confronted with evidence of an incredibly old earth and not a shred of evidence for a world-wide flood.  How can they not be controversial.

Also, the Old Testament is clearly written for a select people.  When Christ came, he preached first to the Jews and then to the Gentiles.  We have been included in His people.  That is the gift of the New Testament.  That is why it is so important. 

There are quite a few other aspects covered in the survey, including daily time reading habits and other demographic data.  Read the whole thing.