"Maybe it's time to correct the textbooks. Many biology texts today still refer to the appendix as a 'vestigial organ'," says Dr. William Parker, assistant professor of Surgical Sciences at Duke.Regarding Australasia, as Kenneth Miller has pointed out, the fact that the forms that show up so closely mimic those of placentals ought to suggest strongly that evolution does not proceed at random.
He revealed that his research team used a modern approach to evolutionary biology called cladistics, which utilizes genetic information in combination with a variety of other data to evaluate biological relationships that emerge over the ages, for their study.
He said that his study has shown that the appendix has evolved at least twice, once among Australian marsupials and another time among rats, lemmings and other rodents, selected primates and humans.
"We also figure that the appendix has been around for at least 80 million years, much longer than we would estimate if Darwin's ideas about the appendix were correct," he said.
This is a blog detailing the creation/evolution/ID controversy and assorted palaeontological news. I will post news here with running commentary.
Friday, August 21, 2009
Appendix Not Vestigial?
How Early Life May Have Unfolded
This endosymbiosis, or merging of two cells, enabled the evolution of a highly stable and successful organism with the capacity to use energy from sunlight via photosynthesis.The Nature article is a tad clearer in terms of why this is a necessary inference. The conclusion reads, in part:Further evolution led to photosynthetic organisms producing oxygen as a byproduct. The resulting oxygenation of Earth's atmosphere profoundly affected the evolution of life, leading to more complex organisms that consumed oxygen, which were the ancestors of modern oxygen-breathing creatures including humans. "Higher life would not have happened without this event," Lake said. "These are very important organisms. At the time these two early prokaryotes were evolving, there was no oxygen in the Earth's atmosphere. Humans could not live. No oxygen-breathing organisms could live."
We cannot say exactly how much time this symbiosis required, but it definitely did not happen in the past two billion years. We know this because the cyanobacterial double-membrane prokaryotes are responsible for producing the Earth’s oxygen atmosphere. This implies that their diversification, and hence that of the double-membrane clade, started before the rise of oxygen in the atmosphere, approximately 2.4 billion years ago48,49 or possibly earlier (2.7 billion years ago48,50). Because the double-membrane prokaryotes are descended from Actinobacteria and Clostridia, these two donor clades must trace their beginnings back to even earlier times. Thus there seem to be no obvious physical time constraints on how long the initial phase of the double-membrane symbiosis lasted. In the future, the double-membrane clade may provide a useful reference taxon for calibrating molecular clock studies.1The problem with a study like this is that folks like the DI will respond that there is no reason to infer evolution rather than special creation for something like this, despite clear evidence that the genome has evolved in other areas. This is not a smoking gun, it is a well-reasoned inference from the data.
1Lake, James E. (2009)Evidence for an early prokaryotic endosymbiosis. Nature. Vol. 460, 20 August, p. 967-971. doi:10.1038/nature08183
Thursday, August 20, 2009
New CSC Video Said to Support Intelligent Design...But Doesn't
The original animation by Light Productions reveals in intricate detail how the digital information in DNA directs protein synthesis inside the cell, revealing a world of molecular machines and nano-processors communicating digital information.The video can be seen here. It does a good job of explaining replication, transcription and translation of the DNA but nothing more than that. As it is only three and a half minutes long, it does not try to tackle mutations. Nothing in the video is new and it is nothing that I do not teach in my Anthropology 110 course. Consequently, the title "New Video Shows DNA Evidence for Intelligent Design" is not just misleading, it is false. While the workings of the cell are, indeed, intricate and wondrous, just because they are does not give evidence to support ID. In fact, the only thing new here is that the animation is neat.
“This video is going to make things worse for critics of intelligent design,” Dr. Meyer explains. “They will have more difficulty convincing the public that their eyes are deceiving them when the evidence for design literally unfolds before them in this animation.”
I have not read Stephen Meyer's book yet, but it is on my list. This is just another example of the DI promising more than they can deliver.
How the Universe Unfolded
The research was conducted by a team of scientists associated with the LIGO (Laser Interferometer Gravitational-Wave Observatory) Scientific Collaboration and the Virgo Collaboration.
The new measurements by LIGO directly probe the gravitational wave background in the first minute of its existence, at time scales much shorter than accessible by the cosmic microwave background.I love research into the Big Bang. It is, for the most part, ideology-free.
"Our results are a major step toward the detection of primordial gravitational waves - ripples in the fabric of space and time - that were created as the universe expanded in its earliest moments," said Lee Samuel Finn, a Penn State professor of physics and of astronomy and astrophysics.
"This type of information would provide vital clues to understanding how the structure of the universe evolved. For example, why is our universe clumped into galaxies? This information also would tell us whether some of the fantastical proposals are correct about the way our universe came to be," he said.
Oh, To Fly Like a Duck...
Padian, if you will recall, was a principle witness for the prosecution in the Dover School Board trial of 2005 and, along with the testimony of Kenneth Miller, was instrumental in showing the vacuity of the position that Intelligent Design can be characterized as science. Perlman continues:For the first time, a team of scientists, including a noted UC Berkeley paleontologist, has discovered the tracks that one small pterosaur made as it landed on the muddy shore of an ancient sea sometime between 150 million and 115 million years ago.
That gently sloping shore is now a broad stretch of flat rock known as Pterosaur Beach in a limestone quarry near the tiny village of Crayssac in southwestern France. It's so far off the tourist routes that it has no hotel or inn, so Kevin Padian, the Berkeley scientist who has studied pterosaur fossils for more than 25 years, and his French and Swiss colleagues slept at the local school while there to investigate the newfound tracks.
"These tracks," Padian said, "tell us that this animal must have flapped its wings with its body upright, stalled in the air like many waterbirds do, and landed feet first just the way flying ducks like mergansers do today. Then, its newfound tracks show this pterosaur took a few short, stuttering steps, turned slightly to its left, and there the tracks stop."Another mystery solved!
Tuesday, August 18, 2009
Human Evolution and Divine Purpose
Even as some Christians deny that new species can evolve, that macroevolution has taken place, and that complexity can develop through natural genetic processes, the genomic revolution of this century has established the truth of all three evolutionary concepts.This perspective is absolutely contra Dr. Hunter's, who argues that genetics do not support "Darwinism's" predictions. In support of his argument, Dr. Finlay marshalls evidence from DNA transposons and retrotransposons, "recycled spare parts," and duplications. These are genes that figure in many illnesses that afflict humans and this evidence is similar to that of ERVs in terms of inferred shared ancestry. About transposons he writes:
DNA transposons are short segments of self-propagating DNA that reside in the genomes of many organisms. Their origins are lost in remote history. They possess an enzyme called a transposase which enables them to cut-and-paste themselves into new sites in the genome. They appear to increase in number by co-ordinating their activities with episodes of cellular DNA synthesis. There are nearly 400,000 individual DNA transposons inserted into our genome, of which essentially all are shared with apes and OWMs.[Old World Monkeys](citation omitted)What is interesting is that these transposons reflect a fascinating example of exaptation (when one gene is co-opted by an existing system for a different function than what it was originally intended). Our DNA is rife with these. As Finlay states:
Many of the DNA transposons scattered throughout our genome have acquired genetic functionality since the time they inserted into the primate germ-line. Some now function as genes that generate RNA molecules involved in widespread and important regulatory functions (citation omitted)So, how as Christians, are we to view this kind of evidence? How does this fit into a Christian perspective that has, as one of its central tenets, the fall and subsequent sinfulness/corruption of the world? Finlay writes:
If we are God’s creation, then our DNA sequence is an authoritative text that God has written. It is the Primal Testament that describes how God in faithfulness has created, via the randomness of genetic happenstance, the creature that bears his image and that he intends to glorify. Francis Collins has stated that shared transposable elements have implications for common ancestry that are “virtually inescapable.” We must listen attentively to this text, and respond appropriately (Citation omitted).This is a critical piece of the puzzle in the evolutionary continuum because the vast majority of people that argue against evolution do so from the (mistaken) viewpoint that the fossil record doesn't support it. Very few people that argue against evolution would think to take pot shots at genetics. Genetics is as central to biology as evolution is and is (in so much as is possible) tangible. It can be shown conclusively that certain genes result in certain phenotypes when expressed, even though the genes themselves cannot be seen without a microscope. He concludes thus:
There is of course mystery in this. The achievement of God’s purposes in the light of genetic or human freedom is a paradox to which we must hold. The actions of God in history are not obvious to the casual observer. Butterfield wrote that we cannot find the hand of God in secular history unless we have first gained assurance of God’s involvement by personal experience. It is Christ who makes sense of Israel’s tumultuous past. Once we have recognized how God’s blessing for the world arose from Israel’s tragic history, we may perceive with worship that he has created humanity by the random evolutionary route attested by our genome.Of course, this whole exercise sidesteps the problem of the historical Adam, the fall and sinful man, and the ancient genetic history of humans is an idea that most Christians cannot process and many won't. On the other hand, it is far from clear that a literal view of death is warranted from the scripture anyway, or else Adam and Eve would have physically died upon eating of the Tree of the Knowledge of Good and Evil, which they obviously did not. This is what allows the literal crowd to accept the ancient origin of humans and a literal Adam as well. Of course, the problems compound for the literal crowd when you get to the long lifespans, the worldwide flood and the Tower of Babel. This is why they call it the "primeval history" and why Conrad Hyers remarks:
...a literal interpretation of the Genesis accounts of creation is inappropriate, misleading, and unworkable. It presupposes a kind of literature and concern that is not there. In doing so it misses the symbolic richness of what is there and subjects the biblical materials, and the theology of creation, to a completely pointless and futile controversy. The "creation model" of origins is not what the texts are about. So the issue, ultimately, is not that creationism is scientifically and historically incorrect, but biblically incorrect.If so, then the genetic evidence will fit right in with every other piece of evidence that supports the ancient age of the universe and the earth.
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Exobiology Gets a Boost
Just for the sake of argument, I would love to know how such a sample was collected without contamination. Assuredly NG would have taken precautions to that effect. Likely, that will come out in the journal publication because that will be the first question that everyone will ask.The new finding, which has been accepted for publication in the journal Meteoritics and Planetary Science, also has implications for finding alien life.
"The discovery of glycine in a comet supports the idea that the fundamental building blocks of life are prevalent in space, and strengthens the argument that life in the universe may be common rather than rare," said Carl Pilcher, director of the
NASA Astrobiology Institute, which co-funded the research.NASA's Stardust spacecraft captured samples of gas and dust from Wild 2 in 2004. The material parachuted to Earth in 2006. Since then, scientists around the world have been analyzing the samples to learn the secrets of comet formation and our solar system's history.
If this is the case, it knocks the legs out from under another creationist argument—that life did not form in this way, from a "primordial soup." Keep in mind that this, in no way, undermines the possibility that God still created life. It simply means that there is yet more evidence that it happened in a way that is not compatible with the YEC model.
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Friday, August 14, 2009
People and Fire
It is likely that humans had some ability to control fire earlier than this, given that there is evidence that Homo erectus had done it in some way as early as 200-300 ky BP. Still, this is quite a step forward at this point.The discovery has its roots in experimental archaeology. Kyle Brown, an archaeologist at the University of Cape Town in South Africa, and colleagues were trying to recreate the axes and hafted tools they were finding in the Pinnacle Point caves--a site containing many artifacts of early human activity--to learn more about how they were made. One of the local rocks that these early humans fashioned tools from is silcrete, which is similar to flint. But when the researchers tried to recreate the tools, they couldn't quite get it right. "We were having a really hard time coming up with [something] that looked like what we were finding at the site," Brown says.
So the researchers began experimenting with heat treatment. After much trial and error, they found that it took 20 to 40 kilograms of hardwood and almost 30 hours to create the 300°C temperatures in silcrete needed to fashion tools like those seen at Pinnacle Point. Those conditions alone were a good sign that the stone tools were no campfire accident, the team reports tomorrow in Science. "It requires a lot of planning," Brown says. "It's not the kind of thing people would do with an ordinary cooking fire." Heating makes the stones easier to flake and shape into blades.
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Tuesday, August 11, 2009
Science, Religion and War
It often appears as though Dawkins and his followers -- often dubbed the New Atheists, though some object to the term -- want to change the country's science community in a lasting way. They'd have scientists and defenders of reason be far more confrontational and blunt: No more coddling the faithful, no tolerating nonscientific beliefs. Scientific institutions, in their view, ought to stop putting out politic PR about science and religion being compatible.I'm guessing he isn't talking about the New Testament. Myers and Dawkins are the pre-eminent evolutionary biologists who moonlight as vocal atheists. They are joined by journalist Christopher Hitchens as the triad of evangelical atheists. As the authors point out though, they are not the norm:
The New Atheists win the battle easily on the Internet. Their most prominent blogger, the University of Minnesota biologist P.Z. Myers, runs what is probably the Web's most popular science blog, Pharyngula, where he and his readers attack and belittle religious believers, sometimes using highly abrasive language. Or as Myers put it to fanatical Catholics at one point: "Don't confuse the fact that I find you and your church petty, foolish, twisted and hateful to be a testimonial to the existence of your petty, foolish, twisted, hateful god."
More moderate scientists, however -- let us call them the accommodationists -- still dominate the hallowed institutions of American science. Personally, these scientists may be atheists, agnostics or believers; whatever their views on the relationship between science and religion, politically, spiritually and practically they see no need to fight over it.In a sense, the new atheists are cutting off their noses to spite their faces. These organizations are powerful and command much attention in the scientific community. The only Christians that see the NCSE as adversarial are the Young Earth Creationists and they see all of normative science that way. It is also telling that these YEC organizations, while popular among some of the less-informed public, are anathema to scientists and scientific organizations. As the interview between Dawkins and Wendy Wright showed, they won't listen to evidence and and cannot be reasoned with. That is not the group that Dawkins and his compatriots are after. Calling them names won't change their minds and that is all Dawkins and company can seem to do. No, if the new atheists can get the rank and file scientists to come around to their way of thinking, they have won half the battle. They have too much contempt for the general public to be effective. Perhaps Darwin was right after all:
Thus the American Assn. for the Advancement of Science and the National Academy of Sciences take the stance that science and religion can be perfectly compatible -- and are regularly blasted for it by the New Atheists. Or as the National Academy of Sciences put it in a recent volume on evolution and creationism: "Today, many religious denominations accept that biological evolution has produced the diversity of living things over billions of years of Earth's history. ... Religious denominations that do not accept the occurrence of evolution tend to be those that believe in strictly literal interpretations of religious texts."
A smaller but highly regarded nonprofit organization called the National Center for Science Education has drawn at least as much of the New Atheists' ire, however. Based in Oakland, the center is the leading organization that promotes and defends the teaching of evolution in school districts across the country.
It turns out that late in life, when an atheist author asked permission to dedicate a book to Darwin, the great scientist wrote back his apologies and declined. For as Darwin put it, "Though I am a strong advocate for free thought on all subjects, yet it appears to me (whether rightly or wrongly) that direct arguments against Christianity & theism produce hardly any effect on the public; & freedom of thought is best promoted by the gradual illumination of men's minds, which follows from the advance of science."The current generation of new atheists can never hope to achieve this with their current tactics.
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William Dembski and Biased Academics
This is the undegrad [sic] course. You have three things to do: (1) take the final exam (worth 40% of your grade); (2) write a 3,000-word essay on the theological significance of intelligent design (worth 40% of your grade); (3) provide at least 10 posts defending ID that you’ve made on “hostile” websites, the posts totalling 2,000 words, along with the URLs (i.e., web links) to each post (worth 20% of your grade).There are other requirements, such as reading The Language of God by Francis Collins and critiquing it. I am guessing Dembski takes a dim view of the book. I know that Collins has a dim view of Intelligent Design. It is the last part that gets everyone's attention:
You are the Templeton Foundation’s new program director and are charged with overseeing its programs and directing its funds. Sketch out a 20-year plan for defeating scientific materialism and the evolutionary worldview it has fostered if you had $50,000,000 per year in current value to do so. What sorts of programs would you institute? How would you spend the money?What I find surprising is not that attention is being brought to this (although I think that is a valid point), it is the surprise that it is happening. I would be willing to bet that a perusal of any of the "academic" courses at the ICR would yield material so much more biased that it would raise red flags at any established university and likely be thrown out. In fact, such a course is likely commonplace at most Christian-based schools. For example, Ozark Christian college has, as part of its Creation and Science class the following course objectives:.
- Explain the nature and importance of both science and faith in the life of the modern Christian.
- Impress the student with the need to be able to answer the questions of those confused about the issue of science versus faith.
- Present the case made for both the evolutionary and creation models of origins.
- Give the student opportunities to practice writing critical and college level papers.
- Strengthen the Christian in faith and encourage him in his worship of the one who made all things ex nihilo.
- Impress upon one the distinction between macro and micro evolution.
- Introduce the student to the dogmatism present in much of science on the issue of evolution.
- Explain the implications of accepting evolutionary theory.
- Examine the origins of both the universe and our solar system.
- Survey some of the evidence that points to a designer creator.
- Analyze the problem of the age of the earth and universe.
- Confront the student with the absurdity of the idea that extensive biological progress has been made through chance occurrences.
- Present a critical analysis of some of the more popular proofs that have been used for evolution.
What I find unusual about Dembski's course is not that it is so blatantly biased, it is how lacking it is in academic rigor. There are no scientific papers referenced and the students are asked to go to web sites. I teach information literacy to students at a local university and one of the first things that I teach is that web sites are usually not up to the standards of academic papers. Academic papers are peer-reviewed and undergo revision and rewriting before they are deemed to be worthy of any academic discipline. Web sites (like this one) have no accountability and some have notoriously unreliable information. Does he teach the difference? Does he teach how to recognize a bad website, or one that doesn't provide supporting documentation? When I was an undergrad, there were no web sites. Academic papers were what we read and critiqued. He should be using the same standards.
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Monday, August 10, 2009
On Vacation...
353 New Species
A flying frog, the world's smallest deer and the first new monkey to be found in over a century are among 350 new species discovered in the eastern Himalayas in the past decade, the WWF said Monday.As Ian Malcolm would say "Life finds a way."But the environmental group said the vital habitats of the mountain range were facing growing pressures from unsustainable development in the region, which spans Nepal, China, India, Bhutan and Myanmar.
In a report released here Monday, it said climate change, deforestation, overgrazing by domestic livestock and illegal poaching and wildlife trading threatened one of the biologically richest areas of the planet.
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Saturday, August 08, 2009
The Earliest Known Human Infection
As the story goes on to say, there is no way to know for sure how the victim got the disease but there are some possibilities.First uncovered in the 1970s in the Sterkfontein caves, not far from Johannesburg, two of the vertebrae belonging to an older male are dotted with visible lesions.
One study concluded that this damage was caused by ageing.
According to a report in New Scientist, after collecting X-rays and scanning electron micrographs of the bones, D'Anastasio now contends that brucellosis better explains the lesions.
Brucellosis causes a flu-like illness in humans, but if the bacteria reach muscles and bones, they tend to infect the same spinal vertebrae that are damaged in the Australopithecus bones.
Other infections, like tuberculosis, also infect spinal bones, but they tend to be less discriminate and go after other vertebrae.
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Friday, August 07, 2009
Global Warming and Biodiversity
"Today, the middle of Wyoming is a vast desert, and a few antelope and deer are all you see," said lead author Michael Woodburne, honorary curator of geology at the Museum of Northern Arizona. "But 50 million years ago, when temperatures were at their highest, that area was a tropical rainforest teeming with lemur-like primates, small dawn horses and a number of small forest rodents and other mammals. In fact, there were more species of mammals living in the western part of North America at that time than at any other time."By the end of the Oligocene, all of the North American primates had died out or moved south because of the shifting temperatures.
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Thursday, August 06, 2009
Basal Mammal with Opposable Thumbs Discovered
Another piece of the puzzle.University of Toronto paleontologist Robert Reisz and his former student Jorg Frobisch, now with Chicago's Field Museum, have published a study documenting the grasping abilities and tree-dwelling habits of suminia gemanovi - a long-tailed, lizard-like creature that was nevertheless more closely related to our own mammalian ancestors than to any reptile.
Part of a dead-end family of proto-mammals that disappeared before the dinosaur age, suminia shared a distinctive skull structure with mammals that distinguished it from lizards and birds.
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Tyrannosaurus Rex: Baby Killer
This will surely not improve the animal's already checkered image.David Hone, a British palaeontologist working in China, believes the Tyrannosaurs preferred to prey upon small and unwary baby rivals rather than their fully-grown parents.
His study, carried out with Oliver Rauhut of the Bavarian State Collection for Palaeontology and Geology in Munich, suggests that baby-eating was a common behaviour among the large predatory dinosaurs, offering a possible explanation why so few juvenile dinosaurs have been found in fossil records.
The pair, whose work was published in the journal Lethaia and reported in The Independent, believe that eating baby dinosaurs whole or in large pieces enabled T.rex to digest the minerals and nutrients stored in the bones of their small prey.
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Richard Dawkins and Wendy Wright: Modern Creationism in a Nutshell
She uses all of the typical talking points
- fossils mistakenly identified
- evidence against evolution being suppressed
- no transitional forms or evolution from one species to another
- Darwin led to Hitler
Dawkins is admirably restrained. As Charles Johnson remarks, go to YouTube for the rest of the interviews. You will need to remove the breakables from the room, however.
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Concerns about the Weekly Standard?
...has also helped fund the Discovery Institute, which promotes intelligent design and criticizes evolution, and the Parents Television Council, an organization that protests against what it views as television indecency.Hopefully, the well-reasoned conservative writings will continue unabated, but it is possible that articles of a not-so-well-reasoned nature might find their way into the magazine. I hope not. I read the WS to get away from the usual conservative associations.
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Wednesday, August 05, 2009
On the Fringe of Palaeoanthropology
Fossil evidence shows striking anatomical similarities between humans and orangs, including enamel molars, similar hairlines and shoulder blades, and even the ability to smile with lips closed, Jeffrey H. Schwartz and John Grehan, director of science at the Buffalo Museum, say in the Journal of Biogeography.This will be a hard sell, considering that there is fossil evidence suggesting that the orang cranial morphology has been in place for at least 10 million years in the form of GSP15000. That isn't the only problem:Even our skulls and eyebrow bone structure more closely resemble the orangutan's than the chimp's or gorilla's dramatically ridged eyebrows, they say.
Gotta hand it to them for trying to shake things up. And, yes, they probably are wrong.But defenders of the chimp theory produced genome evidence indicating chimps have a more than 98 percent genetic similarity with humans.
This compares with a 97 percent similarity with the gorilla and only 96 similarity with the orangutan genome, they say.
"As far as I know -- and I know Jeff well, and we are friends -- he and John Grehan are the only two scientists on the whole planet who subscribe to this red-ape hypothesis," Todd Disotell, an anthropologist with New York University's Center for the Study of Human Origins, told the Pittsburgh Post-Gazette. "I think he is utterly, factually wrong."
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Part of a Whole World View
He said that he believed the Nigerian "Taliban" group that engaged security forces in a bloody shoot out that left hundreds dead in Maiduguri town alone, fought for the reign of Islam "from here (Nigeria) to Spain".These groups truly want a return to Andalusia. The report continues:
He continued, "We hate Western education; it is a sin and we abhor it. It has polluted the world and if given a second chance I will continue to fight".
So, the group had consciously modelled itself after the real Taliban, with many well-educated members, burning their certificates.The group is apparently well-funded from outside, which is grim reminder that they do not exist in isolation but are part of a well-networked jihadist movement that demands a return to the eleventh century. Scary.
This brings to the fore one issue that many commentators have so far swept under the carpet; the fact that the group was really Islamic and not just a crazed sect, though it may rightly be said to hold crazy ideas aplenty.
One of such hard to understand idea is that Darwinism and the theory of evolution is anathema to the group. Why? Well, just as the group scorns the conventional idea of rainfall being caused by evaporation at the earth's surface and condensation as rain-bearing clouds, it opposes the teaching of Darwin's theory because it tends to remove the hand of God both in the making of rain each and every time and in the determination of every trait in the product of each and every human activity. Yet, while we may scoff at a terrible misunderstanding of a tested and proven law of Geography as the cause of rainfall, it would be foolhardy not to take seriously the group's antagonism to the Nigerian Constitution because they desire the Sharia system.
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